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metapr2 1.0.3

Released: 2022-04-30

Database

version 1.1 - 41 datasets
  • Tara Ocean V9 samples have been reprocessed using the dada2 pipeline. In version 1.0, the original swarms were used instead of ASVs.

Tabs of application

Datasets
  • Selected datasets appear first ordered by dataset_id
  • Search error fixed
Query
  • A fasta formatted sequence with header can now be used.
Download
  • The zipped file now contains a fasta file with the asv_code and the taxonomy in the header.

metapr2 1.0.2

Released: 2021-12-14

Tabs of application

Datasets
  • Settings (datasets, type of samples) can be saved and recalled
Taxonomy
  • Now more than one taxon can be selected
  • Three divisions can be removed (Fungi, Metazoa and Streptophyta)
  • Taxa (selected and excluded) can be saved and recalled
  • It is necessary to press the “Validate taxa” to replot after changing taxo selection
Treemaps
  • Color of taxa now match other panels
  • Add a treemap of ASVs number
Maps
  • Add topography
  • Add equator, tropics and polar circle
Barplots
  • Add number of samples for each bar
Diversity Alpha
  • Use Violin + Sina plot for discrete variable
  • Allow discretization of continuous variables (e.g. depth, latitude)

metapr2 1.0.1

Released: 2021-11-22

Tabs of application

Documentation
Barplots
  • Make interactive (R plotly library)
  • Add coloring by ecological function
  • Add time series

metapr2 1.0.0

Released: 2021-11-19

  • Initial release

Database

version 1.0 - 41 datasets
  • Tara Ocean V9 samples have been not been reprocessed and the original swarms are used instead.