Skip to contents

This panel allows to select the data analyzed according to a variety of criteria. When the application is started a number of defaults values are selected to limit the number of samples.

Select datasets, samples and ASVs

Select Choices Default
Datasets Access through panel “Datasets”. All
Samples
DNA_RNA DNA or RNA DNA
ecosystems oceanic, coastal, freshwater etc … All
substrates water, ice, soil etc… water
fraction pico 0.2-3 µm / nano 3-20 µm / micro 20-100 µm / meso 100-1000 µm / total 0.2-100 or 200 µm pico, total
Depth levels surface (0-10 m), euphotic (10-250 m), bathypelagic (250-1000 m), bathypelagic (> 1000 m) surface
Minimum number of reads per ASV 100-10,000 - If you increase this number the number of ASVs will decrease. 100





Select taxonomy

It is possible at each level (supergroup, division, class, order, family, genus, species, asv_code) to select 1 or more groups. In order to update the plots, you need to press the Validate button. You can also completely reset the taxonomy selection using the Reset button. It is possible to save and reload the choices made. The taxonomy is saved as a (yaml) file.

Yaml taxonomy file

level: asv_code
name:
- ec4282114f
- edef1142c8
- 8b130de34f
supergroup: Archaeplastida
division: Chlorophyta
class: Mamiellophyceae
order: Mamiellales
family: Mamiellaceae
genus: Micromonas
species: Micromonas_polaris
asv_code:
- ec4282114f
- edef1142c8
- 8b130de34f
taxa_excluded: Streptophyta