pr2database 4.13.0

  • Released: 2021-03-17
  • Dinophyceae, Suessiales - Taxonomy updated (J. del Campo)
  • Stramenopiles, Diatoms, Thalassiosirales - Taxonomy updated (L. Arsenieff)
  • Stramenopiles, Pelagophyceae - Taxonomy updated (Ana Maria Cabello)
  • Stramenopiles, Chrysophyceae - Taxonomy updated (D. Vaulot)
  • Adding sequences from the Roscoff Culture Collection (D. Vaulot)
  • Adding sequences from Silva identical to existing sequences in PR2 based on hash sequence value.
  • Adding Silva taxonomic annotation (D. Vaulot)
  • Detailed changes

pr2database 4.12.0

  • Released: 2019-08-08
  • Geolocalisation of sequences (D. Vaulot)
  • Apicomplexa - Taxonomy updated - 2619 new sequences, 5889+239 sequences updated, 89 sequences removed (J. del Campo)
  • Chaetoceros - 196 new sequences added and taxonomy updated (C. Gaonkar)
  • Stramenopiles - Taxonomy updated (R. Massana)
  • 16S plastid and cyanobacteria sequences added from PhytoRef database (J. Decelle/ D. Vaulot)
  • Detailed changes

pr2database 4.11.1

pr2database 4.11.0

  • Released: 2018-10-30
  • Various bug fixes. Remove sequences shorter than 500 bp (D. Vaulot)
  • Chlorophyta - Three new classes introducted (Chloropicophyceae, Picocystophyceae, Palmophyllophyceae) - 198 sequences updated and 104 sequences added (A. Lopes dos Santos)
  • Chlorophyta - Mamiellophyceae (Micromonas, Ostreococcus, Mantoniella) - 872 sequences updated and 8 sequences added (D. Vaulot)
  • Ciliophora - Except Spirotrichea - 4550 sequences updated, 2478 sequences added, 652 sequences removed (Eukref - V. Boscaro)
  • Detailed changes

pr2database 4.10.0

  • Released: 2018-03-08
  • Fixing artefactual sequences, removing chimeras and labelling reference sequences (D. Vaulot)
  • Detailed changes

pr2database 4.9.0

  • Released: 2018-02-20
  • Dinophyceae - Incorporation of the DinoRef database (1564 sequences verified and updated, 213 added) (Solenn Mordret, Roberta Piredda, Diana Sarno)
  • Detailed changes

pr2database 4.8.0

  • Released: 2018-02-06
  • Cercozoa, Perkinsea (30 sequences) (Martina Strittmatter)
  • Detailed changes

pr2database 4.7.1

  • Released: 2017-11-20
  • Database transferred to GitHub
  • Ciliates (Spirotrichea) (C. Bachy, Wei-Ting Chen)
  • Database transferred to GitHub
  • Detailed changes

pr2database 4.6

  • Released: 2017-08-23
  • Bolidophyceae corrected according to Kuwata et al. 2017 (3 env clades) (D. Vaulot)
  • Pelagophyceae (D. Vaulot)
  • Database on Figshare

pr2database 4.5

  • Released: 2016-12-17
  • Correct inconsistencies in taxonomy (D. Vaulot)
  • Break Chrysophyceae-Synurophyceae into Chrysophyceae vs. Synurophyceae according to Algaebase (D. Vaulot)
  • Correct Haptophyta taxonomy to follow PR2 rules (_X, _XX etc…) (D. Vaulot)
  • Change CW-Chlamydomonadales to Chlamydomonadales (D. Vaulot)
  • Correct minor dinoflagellates taxonomy (Karlodinium) (D. Vaulot)
  • Database on Figshare

pr2database 4.4

  • Released: 2016-11-10
  • Bolidophyceae corrected according to Ichinomya et al. 2016 (D. Vaulot)
  • Sequences with N removed (D. Vaulot)
  • Sequences not in GenBank removed (D. Vaulot)
  • Database on Figshare

pr2database 4.3

  • Released: 2016-09-04
  • Chlorophyta (D. Vaulot)
  • Database on Figshare

pr2database 4.2

  • Released: 2016-04-13
  • Haptophyta assignations corrected (B.Edvardsen)
  • Database on Figshare

pr2database 4.1

  • Released: 2015-10-23
  • RCC Chlorophyta (M.Tragin)

pr2database 4.0

  • Released: 2015-10-21
  • Haptophyta (B. Edvardsen)

pr2database 3.0

  • Released: 2015-08-31
  • Chlorophyta (M. Tragin)

pr2database 2.0

  • Released: 2015-02-07
  • Rhizaria (T. Biard)

pr2database 1.1

  • Released: 2015-01-04
  • Transfer from previous PR2 database (D. Vaulot)